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Fig. 1 | BMC Bioinformatics

Fig. 1

From: Venn-diaNet : venn diagram based network propagation analysis framework for comparing multiple biological experiments

Fig. 1

Venn-diaNet work flow. Step 1 : Venn-diaNet, as input, takes DEG lists per experiments from user. Step 2 : Uploaded DEGs from Step 1 are interpreted with a Venn diagram and they are organized as sets with table. Now, a user can repeat Steps 3 and 4 as many times as she wants. Step 3 : One or multiple regions of Venn diagram, C i, is selected as seeds for further network propagation analysis. Step 4 : Once seed is defined, Venn-diaNet instantiates a PPI network of DEGs from STRING DB. Network propagation with given seeds from the previous steps. As a result, DEGs are ranked by the probability score calculated during the Markov Random Walk

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