Table 2 Different Blast thresholds on TCDB
From: TooT-T: discrimination of transport proteins from non-transport proteins
Name | BLAST Threshold | Motivation |
|---|---|---|
TCDB_exact | e-value=0; percent identity 100% | exact match |
TCDB_high | e-value 1e–20; percent identity 40%; query coverage 70%; subject coverage 70%; and difference in length of 10% | thresholds recommended by Butler et al. [3] for TCDB Blast |
TCDB_med | e-value 1e–8% | threshold recommended by Barghash et al. [4] as an acceptable normalized BLAST threshold when dealing with a TC system |