Table 3 Average performance of different models
From: TooT-T: discrimination of transport proteins from non-transport proteins
Name | Sensitivity (%) | Specificity (%) | Accuracy (%) | MCC | |
|---|---|---|---|---|---|
SVM | psiPAAC* | 86.73 ±0.29 | 87.99 ±0.54 | 87.29 ±0.11 | 0.7448 ±0.0027 |
blast-PAAC | 87.03 ±0.37 | 86.08 ±0.24 | 86.62 ±0.22 | 0.7299 ±0.0045 | |
psiAAC* | 82.69 ±0.21 | 90.64 ±0.41 | 86.13 ±0.15 | 0.7278 ±0.0036 | |
psiPseAAC* | 80.18 ±0.58 | 91.51 ±0.45 | 85.13 ±0.40 | 0.7125 ±0.0075 | |
blast-AAC | 84.97 ±0.35 | 84.14 ±0.52 | 84.61 ±0.22 | 0.6897 ±0.0050 | |
PSSM | 83.83 ±0.59 | 82.03 ±0.59 | 83.06 ±0.21 | 0.6579 ±0.0038 | |
blast-PseAAC | 84.59 ±0.53 | 78.19 ±0.82 | 81.81 ±0.35 | 0.6306 ±0.0077 | |
PseAAC | 80.45 ±0.42 | 70.62 ±0.70 | 76.19 ±0.44 | 0.5149 ±0.0098 | |
AAC | 79.73 ±0.50 | 70.66 ±0.89 | 75.79 ±0.51 | 0.5069 ±0.0101 | |
PAAC | 77.93 ±0.31 | 72.14 ±0.56 | 75.41 ±0.31 | 0.5014 ±0.0062 |