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Table 1 Query Categories and Standard Operating Protocols supported by the Help Desk

From: The H3ABioNet helpdesk: an online bioinformatics resource, enhancing Africa’s capacity for genomics research

Overall Category Type

Query Category

Associated Workflows

Analysis

Analysis – NGS

Human Variant Calling Workflow

Analysis – GWAS

Variant Discovery and Prioritisation

H3Africa Genotyping Array

GWAS Pipeline

Microbiome Analysis

RNA-seq Workflow

Chip Imputation

16S rRNA Diversity Analysis Workflow

Variant Calling Analysis

Imputation Pipeline

Machine Learning

Biostatistics

H3ABioNet Tools & Services

Standard CRF

Associated information packets, guidelines, and tools.

Minimum Data Standards

General Queries

Human Mutation Analysis Platform (HUMA)

Job Management System (JMS)

Node Accreditation

NetCapDB

Website/Mailing List

Additional Support

REDCap

Linux: Getting Started

Data Management

Linux: Configuring and securing your server

Software Programming

Install, configure and use Globus

Software License Request

Online to transfer large datasets

System Administration

Setup and configure a basic HPC cluster