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Fig. 7 | BMC Bioinformatics

Fig. 7

From: Improving the organization and interactivity of metabolic pathfinding with precomputed pathways

Fig. 7

Filtering pathway results from pyruvate to 3-HP using compound selections. In the webserver visualization, users can specify which compounds they would like to include or exclude in pathway results by typing the KEGG compound ID(s) into the “Filter” text box or by right clicking the compound node(s) in the graph. For example, for a the LPAT pathway search results between pyruvate (C00022) and 3-HP (C01013), b pathways containing either 3-oxopropanoate (C00222) or propanoyl-CoA (C00100) can be excluded from the search, reducing the number of pathways displayed from ninety-six to twelve. c For the same pathway search, the user can require all pathways to contain both 3-oxopropanoate (C00222) and propanoyl-CoA (C00100), which reduces the number of pathways displayed from ninety-six to three

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