Table 1 Timing vs chunk size
From: Alignment-free genomic sequence comparison using FCGR and signal processing
chunk size | read+FCGR+DCT (min) | SVD+kd-tree (sec) | lookup (sec) |
|---|---|---|---|
4000 | 5.5 | 7 | 4.6 |
20000 | 16 | 7 | 3 |
100000 | 71.8 | 7 | 1.8 |
500000 | 93 | 1.7 | 0.2 |
From: Alignment-free genomic sequence comparison using FCGR and signal processing
chunk size | read+FCGR+DCT (min) | SVD+kd-tree (sec) | lookup (sec) |
|---|---|---|---|
4000 | 5.5 | 7 | 4.6 |
20000 | 16 | 7 | 3 |
100000 | 71.8 | 7 | 1.8 |
500000 | 93 | 1.7 | 0.2 |