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Table 3 Phage classifier results

From: Alignment-free genomic sequence comparison using FCGR and signal processing

Method

# guesses avg

% order

% family

% genus

% species

FCGR-to-vector

3.00

78.90

67.30

56.00

40.00

Coabundance

1.74

27.20

22.20

15.90

12.28

homology by blastn

1.40

81.46

73.90

62.32

45

homology by blastx

1.61

66.95

56.10

48.83

32.68

CRISPR method 1

3.93

36.46

31.10

1.22

15.49

CRISPR method 2

1.34

37.44

26.95

26.95

21.71

Exact matches

2.42

61.22

57.32

50.37

40.49

3-mer frequency

1.49

36.71

29.15

21.59

8.17

4-ramer frequency

1.40

37.20

32.80

24.80

9.76

5-mer frequency

1.39

42.32

36.46

28.78

12.32

5-mer frequency

1.29

45.61

40.12

31.34

12.93

7-mer frequency

1.28

46.10

41.10

32.93

14.51

8-mer frequency

1.33

46.71

42.56

34.63

17.07

Codon similarity

17.00

42.07

19.76

15.24

10.37