From: Alignment-free genomic sequence comparison using FCGR and signal processing
Method | # guesses avg | % order | % family | % genus | % species |
---|---|---|---|---|---|
FCGR-to-vector | 3.00 | 78.90 | 67.30 | 56.00 | 40.00 |
Coabundance | 1.74 | 27.20 | 22.20 | 15.90 | 12.28 |
homology by blastn | 1.40 | 81.46 | 73.90 | 62.32 | 45 |
homology by blastx | 1.61 | 66.95 | 56.10 | 48.83 | 32.68 |
CRISPR method 1 | 3.93 | 36.46 | 31.10 | 1.22 | 15.49 |
CRISPR method 2 | 1.34 | 37.44 | 26.95 | 26.95 | 21.71 |
Exact matches | 2.42 | 61.22 | 57.32 | 50.37 | 40.49 |
3-mer frequency | 1.49 | 36.71 | 29.15 | 21.59 | 8.17 |
4-ramer frequency | 1.40 | 37.20 | 32.80 | 24.80 | 9.76 |
5-mer frequency | 1.39 | 42.32 | 36.46 | 28.78 | 12.32 |
5-mer frequency | 1.29 | 45.61 | 40.12 | 31.34 | 12.93 |
7-mer frequency | 1.28 | 46.10 | 41.10 | 32.93 | 14.51 |
8-mer frequency | 1.33 | 46.71 | 42.56 | 34.63 | 17.07 |
Codon similarity | 17.00 | 42.07 | 19.76 | 15.24 | 10.37 |