Fig. 6
From: pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems
Performance benchmark of the Michaelis-Menten reaction on a workstation. Model parameters [41, 71]: total volume 909 μm3, diffusion coefficient 10 μm2s−1, k1 = 0.01 μm3s−1, k2 = k3 = 1 s−1. The initial numbers of E and S molecules are 9090 and 90910, respectively. Duration of simulation 10 s. Simulation or walk event interval (Δt) and runtime (T) are as indicated. a Comparison of simulator runtimes on different number of CPU cores. b Concentration profile outcomes from the simulators