Fig. 7
From: pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems
Parallelized simulation results of MAPK model. a Dual phosphorylation-dephosphorylation cycle of the MAPK cascade. b Concentration profiles when KK0/P0=1 and D=4 μm2s−1. Simulation was executed with all eight-cores of the workstation. c Scalability of pSpatiocyte at low molecule number. Shown are the runtimes of pSpatiocyte when simulating the MAPK model (KK0/P0=1) for 10 s with varying number of cores and diffusion coefficients. The model consists of 1800 total molecules. d Response curves for different diffusion coefficients. All simulations were executed with all eight cores of the workstation