Table 4 Performance of spectral clustering algorithm on the four datasets
Clustering data | RI | ARI | MR | F1 | FMI | CA | NMI | AMI |
|---|---|---|---|---|---|---|---|---|
Breast microarray | ||||||||
Expression | 47.28 | -2.06 | 52.72 | 43.70 | 44.66 | 44.02 | 13.84 | 10.84 |
Whole graph | 67.30 | 26.25 | 32.70 | 49.77 | 50.28 | 55.98 | 30.10 | 27.56 |
summarized graph | 66.05 | 26.09 | 33.95 | 52.40 | 52.45 | 53.11 | 19.96 | 19.00 |
Breast RNAseq | ||||||||
Expression | 53.05 | 6.21 | 46.95 | 60.99 | 61.90 | 62.59 | 10.08 | 8.14 |
Whole graph | 52.81 | 5.62 | 47.19 | 52.85 | 52.85 | 62.09 | 4.30 | 4.11 |
Summarized graph | 54.90 | 9.81 | 45.10 | 54.82 | 54.82 | 65.84 | 7.37 | 7.20 |
Lung | ||||||||
Expression | 89.79 | 79.17 | 10.21 | 88.11 | 88.12 | 94.07 | 78.31 | 77.83 |
Whole graph | 89.56 | 78.73 | 10.44 | 87.91 | 87.92 | 93.77 | 75.94 | 75.02 |
Summarized graph | 87.56 | 74.64 | 12.44 | 85.56 | 85.57 | 92.58 | 72.72 | 72.00 |
Kidney | ||||||||
Expression | 88.67 | 76.42 | 11.33 | 85.88 | 85.88 | 91.97 | 70.89 | 70.66 |
Whole graph | 87.91 | 74.94 | 12.09 | 85.11 | 85.12 | 91.64 | 69.50 | 68.80 |
Summarized graph | 88.09 | 75.42 | 11.91 | 85.52 | 85.56 | 91.64 | 70.00 | 68.80 |