Table 2 Results for chromosome 1 of a tetraploid potato with coverage 10 per haploid and a SNP rate of 0.01
From: Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
Method | Avg. haplotype block length (no. SNPs) | N50 haplotype block length (bp) | Reconstruction rate | Vector error rate | MEC | CPU time (min) |
|---|---|---|---|---|---|---|
SDhaP | – | – | – | – | – | – |
H-PoP | 12 | 1597 | 0.93 | 0.11 | 36,228 | 39 |
Hap++ | 3923 | 828,058 | 0.88 | 0.0083 | 342,956 | 741 |
Hap10 | 3923 | 828,058 | 0.92 | 0.0070 | 218,635 | 54,835 |