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Table 1 Dataset attributes and the discordances of genotypes imputated by fastPHASE and BEAGLE softwares

From: imputeqc: an R package for assessing imputation quality of genotypes and optimizing imputation parameters

Population Size Chrom SNPs fastPHASE BEAGLE
CEPH 60 7 28900 0.031 (0.004) 0.033 (0.003)
CEPH 60 22 13653 0.020 (0.001) 0.023 (0.001)
CEU, TSI, CHB, JPT 401 1 41524 0.0188 (0.0001) 0.020 (0.001)
CEU, TSI, CHB, JPT 401 22 7441 0.029 (0.001) 0.030 (0.001)