actual number of microbial strains | pipeline | OTUs/Features outputted | OTUs/Features annotated | OTUs/Features correctly annotated | Microorganisms correctly discovered | Total count | |
---|---|---|---|---|---|---|---|
Balanced | 59 | dada2 | 91 | 67 | 57 | 39 | 29,344 |
deblur | 343 | 280 | 244 | 41 | 200,317 | ||
CDSnake | 55 | 45 | 31 | 29 | 524,604 | ||
HMP | 21 | dada2 | 68 | 49 | 31 | 19 | 186,027 |
deblur | 53 | 36 | 23 | 18 | 175,027 | ||
CDSnake | 59 | 21 | 17 | 17 | 214,831 | ||
Extreme | 27 | dada2 | 30 | 26 | 25 | 18 | 1,371,591 |
deblur | 18 | 15 | 14 | 13 | 775,144 | ||
CDSnake | 12 | 12 | 9 | 8 | 1,357,589 | ||
All | ~ 105 | dada2 | 180 | 134 | 116 | 77 | 1,392,444 |
deblur | 393 | 317 | 274 | 68 | 224,388 | ||
CDSnake | 123 | 31 | 26 | 25 | 2,231,154 |