Skip to main content

Table 2 Time benchmarking of DADA2, deblur, source CH-HIT-OUT-Miseq utilities and CDSnake on three mock community datasets and set of these datasets (All row)

From: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

 

Time, sec

DADA2

deblur

source CD-HIT

CDSnake

HMP

4614.8

1371.72

2149.59

2263.83

Balanced

8207.96

2558.82

9345.62

9563.57

Extreme

7362.38

3599.73

47,684.8

43,170.37

All

17,509.9

6376.05

39,775.51

39,891.53

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us