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Table 2 Time benchmarking of DADA2, deblur, source CH-HIT-OUT-Miseq utilities and CDSnake on three mock community datasets and set of these datasets (All row)

From: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

  Time, sec
DADA2 deblur source CD-HIT CDSnake
HMP 4614.8 1371.72 2149.59 2263.83
Balanced 8207.96 2558.82 9345.62 9563.57
Extreme 7362.38 3599.73 47,684.8 43,170.37
All 17,509.9 6376.05 39,775.51 39,891.53