Table 7 Global imputation performances across all datasets (healthy and disease) and all missingness mechanisms

mean

0.041 ±0.001^∗

0.040 ±0.001

0.068 ±0.001

0.066 ±0.001^∗

impute.knn

0.052 ±0.008^∗

0.068 ±0.011

0.095 ±0.014^∗

0.119 ±0.016

softImpute

0.042 ±0.003

0.043 ±0.008^∗

0.072 ±0.006

0.077 ±0.020^∗

imputePCA

0.035 ±0.001

0.035 ±0.001^∗

0.062 ±0.002

0.059 ±0.001^∗

SVDmiss

0.046 ±0.001

0.037 ±0.001^∗

0.079 ±0.003

0.065 ±0.002^∗

missForest

0.036 ±0.001

0.036 ±0.001^∗

0.061 ±0.002

0.059 ±0.002^∗

methyLImp

0.037 ±0.001

0.033 ±0.001^∗

0.062 ±0.002

0.058 ±0.002^∗