Table 1 Runtime for different datasets and 16 threads. Datasets are ordered by genome and size
From: RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads
Dataset | neurons_900 | neuron_9k | t_4k | pbmc8k |
|---|---|---|---|---|
# Reads | 52.8M | 383.4M | 335.2M | 784.1M |
Filesize | 18.3GB | 145GB | 117GB | 273GB |
RainDrop | 1m59s | 19m24s | 14m50s | 36m10s |
Alevin | 6m55 | 32m15s | 33m31s | 84m36s |
Cell Ranger | 60m23s | 350m26s | 291m21s | 804m17s |