Table 6 Mean ± standard deviation of Cell-agreement (rows 1 and 2) and Gene-agreement (rows 3 and 4) of each method compared to RainDrop for different datasets. Datasets are ordered by genome and size
From: RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads
Method | \(C_{neurons\_900}\) | \(C_{neuron\_9k}\) | \(C_{t\_4k}\) | Cpbmc8k |
|---|---|---|---|---|
Alevin | 0.97±0.010 | 0.97±0.010 | 0.96±0.013 | 0.95±0.012 |
CellRanger | 0.98±0.006 | 0.98±0.005 | 0.99±0.005 | 0.99±0.003 |
Method | \(G_{neurons\_900}\) | \(G_{neuron\_9k}\) | \(G_{t\_4k}\) | Gpbmc8k |
Alevin | 0.95±0.19 | 0.95±0.19 | 0.93±0.22 | 0.92±0.23 |
CellRanger | 0.96±0.14 | 0.95±0.17 | 0.95±0.18 | 0.94±0.19 |
Reference used | mm10-3.0.0 | mm10-3.0.0 | GRCh38-3.0.0 | GRCh38-3.0.0 |