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Table 1 Metric costs of σ0, σ1, and σ2

From: Efficient implied alignment

σ0

A

C

G

T

 

σ1

A

C

G

T

 

σ3

A

C

G

T

A

0

1

1

1

2

 

A

0

3

3

3

1

 

A

0

1

1

1

1

C

1

0

1

1

2

 

C

3

0

3

3

1

 

C

1

0

1

1

1

G

1

1

0

1

2

 

G

3

3

0

3

1

 

G

1

1

0

1

1

T

1

1

1

0

2

 

T

3

3

3

0

1

 

T

1

1

1

0

1

2

2

2

2

0

 

1

1

1

1

0

 

1

1

1

1

0

  1. Expansion of the metrics presented in Table 1 is described by [2]