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Table 1 Metric costs of σ0, σ1, and σ2

From: Efficient implied alignment

σ0 A C G T   σ1 A C G T   σ3 A C G T
A 0 1 1 1 2   A 0 3 3 3 1   A 0 1 1 1 1
C 1 0 1 1 2   C 3 0 3 3 1   C 1 0 1 1 1
G 1 1 0 1 2   G 3 3 0 3 1   G 1 1 0 1 1
T 1 1 1 0 2   T 3 3 3 0 1   T 1 1 1 0 1
2 2 2 2 0   1 1 1 1 0   1 1 1 1 0
  1. Expansion of the metrics presented in Table 1 is described by [2]