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Fig. 2 | BMC Bioinformatics

Fig. 2

From: The ranging of amino acids substitution matrices of various types in accordance with the alignment accuracy criterion

Fig. 2

Dependence of the global alignment quality indicators with the PAM120 matrix on the values of the penalty function parameters. In all test sets, the absolute value of the difference between the Accuracy and Confidence values ​​is noticeably smaller than in the case of local alignment, and varies little over most of the region of the penalty function parameters

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BMC Bioinformatics

ISSN: 1471-2105

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