Data set | 30 PAM | 60 PAM | ||||||
---|---|---|---|---|---|---|---|---|
Matrix | Gap open | Gap extention | Accuracy | Confi-dence | Gap open | Gap extention | Accuracy | Confi-dence |
PAM30 | 19.0 | 0.2 | 0.9672 | 0.9883 | 8.0 | 1.0 | 0.6768 | 0.8781 |
PAM60 | 16.0 | 0.2 | 0.9776 | 0.9881 | 14.0 | 0.2 | 0.8635 | 0.9507 |
PAM120 | 10.0 | 0.1 | 0.9816 | 0.9876 | 10.0 | 0.5 | 0.9244 | 0.9519 |
PAM250 | 8.0 | 0.1 | 0.9821 | 0.9862 | 11.0 | 0.2 | 0.9353 | 0.9489 |
Blosum45 | 10.0 | 0.1 | 0.9803 | 0.9861 | 14.0 | 0.2 | 0.9246 | 0.9439 |
Blosum50 | 14.0 | 0.1 | 0.9802 | 0.9862 | 13.0 | 0.5 | 0.9227 | 0.9436 |
Blosum62 | 13.0 | 0.1 | 0.9802 | 0.9862 | 17.0 | 0.5 | 0.9216 | 0.9479 |
Gonnet250 | 8.0 | 0.1 | 0.9828 | 0.9862 | 10.0 | 0.2 | 0.9329 | 0.9437 |
Gonnet_p | 7.0 | 0.1 | 0.9852 | 0.9839 | 8.0 | 0.1 | 0.9390 | 0.9336 |
Optima | 9.0 | 0.1 | 0.9814 | 0.9861 | 17.0 | 0.5 | 0.9138 | 0.9421 |
VTML250 | 9.0 | 0.1 | 0.9808 | 0.9854 | 11.0 | 0.1 | 0.9293 | 0.9426 |
MIQS | 10.0 | 0.1 | 0.9813 | 0.9860 | 12.0 | 0.2 | 0.9287 | 0.9433 |
Pfasum050 | 10.0 | 0.1 | 0.9808 | 0.9860 | 14.0 | 0.2 | 0.9271 | 0.9444 |
Pfasum100 | 10.0 | 0.1 | 0.9800 | 0.9864 | 12.0 | 0.2 | 0.9200 | 0.9452 |
Crooks | 11.0 | 0.1 | 0.9777 | 0.9859 | 14.0 | 0.2 | 0.9098 | 0.9457 |
CCF53 | 10.0 | 0.2 | 0.9796 | 0.9862 | 12.0 | 0.2 | 0.9195 | 0.9453 |
Moll60 | 11.0 | 0.1 | 0.9793 | 0.9862 | 11.0 | 0.5 | 0.9142 | 0.9440 |
Johnson | 15.0 | 0.1 | 0.9795 | 0.9866 | 17.0 | 0.5 | 0.9139 | 0.9465 |
Prlic | 16.0 | 0.1 | 0.9811 | 0.9853 | 21.0 | 0.1 | 0.9251 | 0.9394 |
Blake | 23.0 | 0.1 | 0.9797 | 0.9841 | 25.0 | 1.0 | 0.9188 | 0.9318 |
Benner | 8.0 | 0.2 | 0.9803 | 0.9834 | 10.0 | 0.1 | 0.9197 | 0.9316 |
Miyazawa | 15.0 | 0.1 | 0.9749 | 0.9821 | 17.0 | 0.2 | 0.8941 | 0.9307 |
Data set | 120 PAM | Bali Base | ||||||
Matrix | Gap open | Gap extention | Accuracy | Confi-dence | Gap open | Gap extention | Accuracy | Confi-dence |
PAM30 | 3.0 | 1.0 | 0.1648 | 0.2826 | 4.0 | 1.0 | 0.3207 | 0.4471 |
PAM60 | 4.0 | 1.0 | 0.2781 | 0.4016 | 3.0 | 2.0 | 0.3928 | 0.5026 |
PAM120 | 6.0 | 1.0 | 0.5310 | 0.6969 | 7.0 | 0.5 | 0.4823 | 0.5624 |
PAM250 | 12.0 | 0.5 | 0.7251 | 0.8039 | 8.0 | 0.5 | 0.5427 | 0.5821 |
Blosum45 | 13.0 | 0.5 | 0.6514 | 0.7664 | 10.0 | 0.5 | 0.5621 | 0.6121 |
Blosum50 | 11.0 | 1.0 | 0.6244 | 0.7482 | 11.0 | 0.5 | 0.5494 | 0.6050 |
Blosum62 | 12.0 | 1.0 | 0.5794 | 0.7378 | 11.0 | 0.5 | 0.5375 | 0.6019 |
Gonnet250 | 11.0 | 0.5 | 0.7210 | 0.7769 | 8.0 | 1.0 | 0.5779 | 0.6103 |
Gonnet_p | 11.0 | 0.1 | 0.7659 | 0.7538 | 7.0 | 0.1 | 0.6433 | 0.6338 |
Optima | 10.0 | 0.5 | 0.6424 | 0.7352 | 9.0 | 0.5 | 0.5625 | 0.6107 |
VTML250 | 11.0 | 0.5 | 0.7212 | 0.7757 | 6.0 | 1.0 | 0.5719 | 0.6025 |
MIQS | 12.0 | 0.5 | 0.6969 | 0.7660 | 9.0 | 0.5 | 0.5729 | 0.6079 |
Pfasum050 | 13.0 | 0.5 | 0.6731 | 0.7602 | 10.0 | 0.5 | 0.5668 | 0.6090 |
Pfasum100 | 9.0 | 0.5 | 0.5849 | 0.7343 | 7.0 | 0.5 | 0.5384 | 0.5958 |
Crooks | 7.0 | 1.0 | 0.4902 | 0.6733 | 8.0 | 0.5 | 0.5206 | 0.5958 |
CCF53 | 9.0 | 0.5 | 0.5819 | 0.7395 | 8.0 | 0.2 | 0.5358 | 0.5980 |
Moll60 | 7.0 | 1.0 | 0.5314 | 0.6721 | 8.0 | 0.5 | 0.5289 | 0.6003 |
Johnson | 8.0 | 2.0 | 0.4898 | 0.6623 | 12.0 | 0.5 | 0.5122 | 0.5917 |
Prlic | 19.0 | 1.0 | 0.6714 | 0.7377 | 16.0 | 1.0 | 0.5741 | 0.6098 |
Blake | 25.0 | 4.0 | 0.6781 | 0.7396 | 21.0 | 1.0 | 0.5762 | 0.6016 |
Benner | 12.0 | 0.5 | 0.6296 | 0.6877 | 8.0 | 0.5 | 0.5215 | 0.5480 |
Miyazawa | 11.0 | 1.0 | 0.4928 | 0.6324 | 10.0 | 1.0 | 0.4826 | 0.5395 |