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Table 3 The ratio of local and global alignment quality parameters on 120 PAM test suite sequences and Balibase sequences

From: The ranging of amino acids substitution matrices of various types in accordance with the alignment accuracy criterion

Matrix 120 PAM Balibase
Global / Local Global / Local
Accuracy Confidence Accuracy Confidence
PAM30 4.8938 2.8277 1.9510 1.3901
PAM60 2.9392 2.0120 1.6041 1.2407
PAM120 1.5422 1.1698 1.3035 1.1033
PAM250 1.1481 1.0251 1.1627 1.0720
Blosum45 1.2203 1.0249 1.1555 1.0575
Blosum50 1.2692 1.0513 1.1873 1.0633
Blosum62 1.3759 1.0676 1.2154 1.0724
Gonnet250 1.1275 1.0345 1.1407 1.0718
Gonnet_p 1.0275 1.0253 1.0058 1.0024
Optima 1.5409 1.3453 1.6990 1.5589
VTML250 1.1245 1.0335 1.1443 1.0765
MIQS 1.1545 1.0397 1.1377 1.0658
Pfasum050 1.1908 1.0443 1.1643 1.0685
Pfasum100 1.3631 1.0746 1.2123 1.0908