Table 5 Id and Indel values for sequential and diverging evolution models
Test sets parameters | Sequential evolution | ||||||
|---|---|---|---|---|---|---|---|
id | id | id | indel | indel | indel | ||
N | PAM | (S0, S1) | (S0, S2) | Average | (S0, S1) | (S0, S2) | Average |
1000 | 30 | 0.7481 | 0.7499 | 0.7490 | 0.0324 | 0.0343 | 0.0334 |
1000 | 60 | 0.5788 | 0.5796 | 0.5792 | 0.0526 | 0.0560 | 0.0543 |
1000 | 120 | 0.3758 | 0.3770 | 0.3764 | 0.0740 | 0.0754 | 0.0747 |
10,000 | 30 | 0.7504 | 0.7501 | 0.7503 | 0.0330 | 0.0336 | 0.0333 |
10,000 | 60 | 0.5804 | 0.5807 | 0.5806 | 0.0526 | 0.0511 | 0.0519 |
10,000 | 120 | 0.3767 | 0.3762 | 0.3765 | 0.0755 | 0.0762 | 0.0759 |
Test sets parameters | Divergent evolution | ||||||
id | PAM (id) | indel | PAM (indel) | ||||
N | PAM | (S1, S2) | (S1, S2) | (S1, S2) | (S1, S2) | ||
1000 | 30 | 0.5793 | 60.55 | 0.0662 | 68.56 | ||
1000 | 60 | 0.3756 | 122.25 | 0.1072 | 202.14 | ||
1000 | 120 | 0.2009 | 245.08 | 0.1473 | > 830 | ||
10,000 | 30 | 0.5804 | 60.31 | 0.0661 | 68.30 | ||
10,000 | 60 | 0.3773 | 121.53 | 0.1023 | 170.52 | ||
10,000 | 120 | 0.2025 | 243.45 | 0.1490 | > 830 | ||