Fig. 7
From: LAITOR4HPC: A text mining pipeline based on HPC for building interaction networks
Arabidopsis thaliana’s defensin (PDF) pathway. On the left a representation of all interaction types recovered in the present case study: a Transcription; b Translation; c State transition; d Phosphorylation; e Receptor; f Inhibition; g Activation; h Modulation; i Boolean sign “&” indicating that both proteins activate a transcription. The PDF gene pathway represents the co-occurrences recovered by LAITOR4HPC when using the terms “Plant AND Defensin”. The presented data regards the summary of 31 curated abstracts containing type 1 interactions. Yellow rectangles represent genes; Bright green parallelograms represent RNA transcripts; Light green rectangles are proteins; Light yellow arrow-like figures represent a receptor; Light pink circles are inactive hormone forms; Green oval-shaped forms regard the active form of each hormone. Abbreviations: PDF: Plant Defensin; NO: nitric oxide; JA: jasmonic acid; ET: ethylene; SA: salicylic acid