From: Enhancer prediction in the human genome by probabilistic modelling of the chromatin feature patterns
 |  | The threshold of 0.5 | The best operating point or the threshold of 0.25 for RFECS | The FPR 1% Threshold | |||||
---|---|---|---|---|---|---|---|---|---|
Method | Cell | all | without TSS | threshold | all | without TSS | threshold | all | without TSS |
PREPRINT ML | K562 | 27347 | 21238 | 0.51917 | 26423 | 20476 | 0.65472 | 20531 | 15531 |
PREPRINT Bayesian | K562 | 36079 | 29747 | 0.35121 | 45472 | 37387 | 0.63137 | 29632 | 24553 |
RFECS | K562 | 18956 | 15786 | 0.25 | 44522 | 35089 | Â | Â | Â |
ChromHMM Weak Enhancer | K562 | 180471 | 176912 | Â | Â | Â | Â | Â | Â |
ChromHMM Strong Enhancer | K562 | 69019 | 66888 | Â | Â | Â | Â | Â | Â |
PREPRINT ML | GM12878 | 34448 | 29189 | 0.51917 | 33358 | 28246 | 0.65472 | 26274 | 22088 |
PREPRINT Bayesian | GM12878 | 42480 | 38048 | 0.35121 | 52176 | 46446 | 0.63137 | 35447 | 31904 |
RFECS | GM12878 | 20059 | 17746 | 0.25 | 58560 | 49699 | Â | Â | Â |
ChromHMM Weak Enhancer | GM12878 | 178474 | 175487 | Â | Â | Â | Â | Â | Â |
ChromHMM Strong Enhancer | GM12878 | 64052 | 62599 | Â | Â | Â | Â | Â | Â |
The thresholds estimated from the GM12878 test data | Â | Â | Â | Â | Â | Â | Â | Â | |
PREPRINT ML | GM12878 | Â | Â | 0.23675 | 58053 | 50012 | 0.68115 | 24934 | 20916 |
PREPRINT Bayesian | GM12878 | Â | Â | 0.26116 | 60412 | 53681 | 0.81953 | 25401 | 23134 |