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Table 6 Performance summary: Rank of USMPep compared to competitors across the different datasets

From: USMPep: universal sequence models for major histocompatibility complex binding affinity prediction

Dataset

mean

overall

 

AUC ROC

Spearman r

AUC ROC

Spearman r

MHC class I

IEDB16_I

1st

1st

3 rd

3 rd

HPV

1st

–

1st

–

Kim14

2nd

2nd

1st

2nd

MHC class II

IEDB16_II

4th

4th

3 rd

4th

  1. Scores marked in bold face are best-performing or consistent with the best-performing result within error bars