Table 3 Parameter values set for finding the known DMRs
From: HPG-DHunter: an ultrafast, friendly tool for DMR detection and visualization
Chrom. | BSmooth | DSS-Single | methylKit | HPG-DHunter |
|---|---|---|---|---|
chr1 | 1 | 0,5 | 25 / 0.01 | 0.40 |
chr4 | 0,75 | 1 | 5 / 0.5 | 0.25 |
chr7 | 4 | 0,5 | 15 / 0.01 | 0.35 |
chr8 | 0,1 | 0,5 | 5 / 0.5 | 0.07 |
chr9 | 1 | 0,5 | 15 / 0.01 | 0.40 |
chr10 | 0.5 | 1 | 17 / 0.01 | 0.40 |
chr15 | 0.1 | 1 | 3 / 0.4 | 0.06 |
Avg. | 1.06 | 0.71 | 12.14% / 0.24 | 0.255 |
Std. Dev | 1.35 | 0.27 | 8.07% / 0.25 | 0.16 |
Default | 2 | 1.00E-05 | 25% / 0.01 | 0.25 |