From: A rank-based marker selection method for high throughput scRNA-seq data
Data set | Cells | Genes | Description | Ground truth clusters | Ref. |
---|---|---|---|---|---|
Zeisel | 3005 | 4999 | mouse neurons | 9 (well-separated clusters) | [24] |
Paul | 2730 | 3451 | mouse myeloid progenitor cells | 19 (differentiation trajectory) | [25] |
ZhengFull | 68579 | 20387 | human PBMCs | 11 (some clusters overlap) | [2] |
ZhengFilt | Â | 5000 | Â | Â | Â |
10 x Mouse | 1.3 million | 24015 | mouse neurons | 39 (algorithmically generated) | [3] |
ZhengSim | 5000 | varies | simulated from human CD19+ B cells | 2 | using [26] |