From: A rank-based marker selection method for high throughput scRNA-seq data
Method | Data sets | Package | Version | Ref |
---|---|---|---|---|
RankCorr | All | custom | ||
Spa | Zeisel, Paul | implementation | [14] | |
t-test | All | scanpy | 1.3.7; see text | |
Wilcoxon | All | 1.3.7; see text | ||
edgeR | Zeisel, Paul, ZhengFilt | edgeR, rpy2 v2.9.4 | 3.24.1 | [27] |
MAST | Zeisel, Paul, ZhengFilt | MAST, rpy2 v2.9.4 | 1.8.1 | [28] |
scVI | Zeisel, Paul | Source from GitHub | 0.2.4 | [29] |
Elastic Nets | Zeisel, Paul | scikit-learn [30] | 0.20.0 | [12] |
Log. Reg. | All | scanpy | 1.3.7; see text | [31] |
Random selection | Zeisel, Paul, ZhengFilt, | |||
ZhengFull |