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Table 2 The performance comparison of F1 score between our model and four existing sequence-based methods on four PPI datasets

From: Graph-based prediction of Protein-protein interactions with attributed signed graph embedding

Method Human E.coli C. elegan Drosophila
Our model 98.78 98.92 99.25 99.80
Lasagna [35] 97.25 89.92 98.40 98.89
DFC [25] 95.14 —— —— 96.39
DLSTM [25] 89.10 —— —— 91.05
SAE [20] 94.53 96.03 97.17 97.16