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Table 5 Top 20 outliers detected using Rlogreg for the TNBC dataset*

From: Comparison of methods for the detection of outliers and associated biomarkers in mislabeled omics data

ID

Rank

ER

PR

HER2

y

HER2

HER2

HER2

Perres**

level

_status

_FISH

TCGA-A8-A07U

1

1.74 (−)

0.21 (+)

31.96

non-TNBC

 

–

–

1.36

TCGA-E9-A22G

2

0.44 (−)

0.02 (−)

15.32

non-TNBC

 

+

 

1.32

TCGA-AN-A0FJ

3

0.08 (+)

0.04 (−)

14.28

non-TNBC

1+

+

 

1.29

TCGA-AR-A251

4

1.57 (+)

0.10 (−)

14.02

non-TNBC

2+

Equiv

–

1.23

TCGA-BH-A5IZ

5

5.12(+)

0.03(−)

28.08

non-TNBC

 

–

–

1.22

TCGA-D8-A1XW

6

0.32 (−)

0.11 (+)

21.03

non-TNBC

1+

–

 

1.22

TCGA-AR-A1AJ

7

1.47(+)

0.07(−)

9.74

non-TNBC

 

–

 

1.19

TCGA-D8-A1JM

8

5.00(+)

0.008(−)

21.85

non-TNBC

1+

–

 

1.19

TCGA-E2-A1II

9

0.14(−)

0.19(+)

10.73

non-TNBC

1+

–

 

1.18

TCGA-A8-A07R

10

0.07 (−)

0.02 (−)

28.53

non-TNBC

2+

+

 

1.17

TCGA-A7-A13E

11

0.82 (+)

0.06(−)

46.08

non-TNBC

2+

Equiv

–

1.17

TCGA-B6-A0IJ

12

1.18(+)

0.56(+)

11.12

non-TNBC

   

1.17

TCGA-A2-A1G1

13

0.53 (−)

0.17 (−)

819.76

non-TNBC

2+

Equiv

+

1.16

TCGA-A2-A0YJ

14

0.09 (+)

0.03(−)

240.24

non-TNBC

0

–

 

1.15

TCGA-AO-A0JL

15

0.63 (−)

0.08(−)

63.6

non-TNBC

1+

–

+

1.15

TCGA-AN-A0FX

16

1.13(−)

0.64(−)

24.02

non-TNBC

1+

+

 

1.15

TCGA-AR-A1AH

17

0.03 (+)

0.03 (−)

34.12

non-TNBC

 

–

 

1.14

TCGA-LL-A6FR

18

0.33(−)

0.044(+)

32.23

non-TNBC

2+

Equiv

+

1.12

TCGA-LL-A5YP

19

0.16(+)

0.051(−)

15.09

non-TNBC

1+

–

+

1.11

TCGA-A7-A13D

20

0.52 (−)

0.81 (+)

42.28

non-TNBC

2+

Equiv

–

1.07

  1. *:including the expression values, IHC, and FISH tests of ER, PR, and HER2(individuals highlighted in bold are suspect individuals). **: Rank, the rank of outlierness by the abstract value of Pearson residual. Perres, the abstract value of Pearson residual