Comparison of methods for the detection of outliers and associated biomarkers in mislabeled omics data

BMC Bioinformatics

Table 6 Top 20 outliers detected using enetLTS for the TNBC dataset^*

ID	ER	PR	HER2	HER2_level	HER2_status	HER2_FISH	y	Perres^**
TCGA-E9-A22G	0.44 (−)	0.02 (−)	15.32		+		non-TNBC	37.22
TCGA-A2-A0YJ	0.09 (+)	0.03 (−)	240.24	0	–		non-TNBC	35.66
TCGA-A7-A13E	0.82 (+)	0.06 (−)	46.08	2+	Equiv	–	non-TNBC	33.23
TCGA-A2-A04U	0.02 (−)	0.02 (−)	9.64	1+	–	+	non-TNBC	32.24
TCGA-AR-A0TP	0.04 (+)	0.03 (−)	13.39		–		non-TNBC	32.15
TCGA-AN-A0FX	1.13 (−)	0.64 (−)	24.02	1+	+		non-TNBC	30.70
TCGA-AR-A251	1.57 (+)	0.10 (−)	14.02	2+	Equiv	–	non-TNBC	30.23
TCGA-LL-A6FR	0.33 (−)	0.04 (+)	32.13	2+	Equiv	+	non-TNBC	30.12
TCGA-AC-A62X	0.19 (+)	0.02 (−)	28.53				non-TNBC	30.11
TCGA-BH-A5IZ	5.12 (+)	0.03 (−)	28.08		–	–	non-TNBC	29.99
TCGA-OL-A5S0	0.09 (+)	0.06 (−)	31.92			+	non-TNBC	29.50
TCGA-LL-A5YP	0.16 (+)	0.05 (−)	15.10	1+	–	+	non-TNBC	29.05
TCGA-LL-A8F5	1.08 (+)	0.04 (−)	11.86	1+	–		non-TNBC	27.77
TCGA-B6-A0IJ	1.18 (+)	0.46 (+)	11.12				non-TNBC	27.74
TCGA-A7-A13D	0.52 (−)	0.81 (+)	42.28	2+	Equiv	–	non-TNBC	27.59
TCGA-AR-A24Q	1.00 (+)	0.36 (−)	20.67		–		non-TNBC	27.44
TCGA-S3-AA0Z	16.67 (+)	0.07 (+)	33.07	1+	Equiv	–	non-TNBC	27.31
TCGA-AN-A0FJ	0.08 (+)	0.04 (−)	14.28	1+	+		non-TNBC	27.29
TCGA-AR-A1AH	0.03 (+)	0.03 (−)	34.12		–		non-TNBC	27.04
TCGA-D8-A1JM	5.00 (+)	0.01 (−)	21.85	1+	–		non-TNBC	26.93

*:including the expression values, IHC, and FISH tests of ER, PR, and HER2(individuals highlighted in bold are suspect individuals.). **:Perres, the abstract value of Pearson residual

ISSN: 1471-2105