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Table 1 Experimentally validated melanoma-associated lncRNAs in Homo sapiens

From: An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma

Melanoma-associated lncRNAs

LncRNA name

NCBI accession

Alias

Dysfunction Type

Function

PMID

BANCR

NR_047671

LINC00586

Regulation

Cell migration

22581800

CASC15

NR_015410

LINC00340; CANT; lnc-SOX4–1

Regulation

Progression and phenotype Switching

26016895

CDKN2B-AS1

NR_047538

PCAT12; CDKN2B-AS; NCRNA00089; p15AS; ANRIL; CDKN2BAS; CDKN2B-AS

Regulation

Epigenetic silencing

27461581

GAS5

NR_002578

NCRNA00030; SNHG2

Regulation

Cell migration and invasion

26846479

H19

NR_131223

ASM1; WT2; ASM; BWS; LINC00008; NCRNA00008; D11S813E

Expression

Pathogenesis of melasma

19968822

HOTAIR

NR_047528

NCRNA00072; HOXC11-AS1; HOXAS; HOXC-AS4

Regulation

Cell migration and invasion

23862139

LINC00032

NR_026679

C9orf14; NCRNA00032

Mutation

Nevus development

17099875

LINC00673

NR_036488

HILNC75; LUCAIR1; SLNCR1; HI-LNC75; SLNCR; ERRLR01

Expression

Invasion

27210747

MALAT1

NR_002847

NEAT2; LINC00047; NCRNA00047; HCN; PRO2853

Expression

Cell migration

24892958

MGC16025

NR_026664.1

LOC85009; MELOE

Expression

Immunosurveillance

27486971

MIR31HG

NR_027054

LncHIFCAR; hsa-lnc-31

Regulation

Transcriptional regulator

25908244

PTENP1

NR_023917.1

PTEN-rs; PTH2; PTENpg1; PTEN2; psiPTEN

Regulation

Tumor suppressor

21833010

SAMMSON

NR_110000

LINC01212

Regulation

Cell growth and survival

27008969

SNHG5

NR_003038

C6orf160; LINC00044; NCRNA00044; U50HG

Expression

Pathogenesis of metastatic melanoma

26440365

SPRY4-IT1

NR_131221

SPRIGHTLY

Regulation

Cell invasion & proliferation

25344859

TUG1

NR_002321

LINC00080; TI-227H; NCRNA00080

Regulation

Tumor growth and metastasis

29543785

UCA1

NR_015379

LINC00178; UCAT1; CUDR; onco-lncRNA-36; NCRNA00178

Expression

Cell migration

24892958