Table 1 Recall, precision and F1 score of GenAPI, panX, BPGA, Roary, PanDelos, EDGAR and SaturnV using simulated and real datasets
From: GenAPI: a tool for gene absence-presence identification in fragmented bacterial genome sequences
GenAPI | panX | BPGA | Roary | PanDelos | EDGAR | SaturnV | ||
|---|---|---|---|---|---|---|---|---|
S. typhia | Precision | 1 | 1 | 0.93 | 1 | NA | 1 | 1 |
Recall | 1 | 1 | 1 | 1 | NA | 1 | 1 | |
F1 | 1 | 1 | 0.97 | 1 | NA | 1 | 1 | |
P. aeruginosab | Precision | 0.91 | 0.38 | 0.39 | 0.35 | 0.43 | 0.18 | 0.18 |
Recall | 1 | 1 | 0.94 | 1 | 1 | 1 | 1 | |
F1 | 0.95 | 0.55 | 0.55 | 0.52 | 0.60 | 0.31 | 0.31 | |
E. colic | Precision | 0.95 | 0.47 | 0.26 | 0.23 | 0.24 | 0.12 | 0.09 |
Recall | 0.98 | 1 | 0.88 | 1 | 0.71 | 1 | 1 | |
F1 | 0.97 | 0.64 | 0.40 | 0.38 | 0.36 | 0.21 | 0.17 |