Simulator | Layoutb | Output | Language | Genomic variation | Tumor sample | GC bias | Profiles | Sequencing strategyc | Ref | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SNV | CNV | Indel | Impurity | Aneuploidy | Intra-tumor heterogeneity | Position dependent | Context dependent | |||||||
ART | SE, PE | FQ, SAM | C++, Perl | Â | Â | Â | Â | Â | Â | Â | X | Â | G | [7] |
Grinder | SE, PE | FQ, FA | Perl | Â | X | Â | Â | Â | Â | Â | X | Â | G | [8] |
pIRS | PE | FQ | C++, Perl | X | X | X | Â | Â | Â | X | X | Â | G | [9] |
GemSIM | SE, PE | FQ, SAM | Python | X | Â | Â | Â | Â | Â | Â | X | X | G | [10] |
Wessima | SE, PE | FQ, SAM | Python | Â | Â | Â | Â | Â | Â | X | X | X | E | [11] |
NeSSM | SE, PE | FQ | C, Perl | Â | Â | Â | Â | Â | Â | X | X | Â | G | [12] |
BEAR | SE, PE | FQ | Perl, Python | Â | Â | Â | Â | Â | Â | Â | X | Â | G | [13] |
FASTQSim | SE | FQ | Python | Â | Â | Â | Â | Â | Â | Â | X | Â | G | [14] |
SInC | PE | FQ | C | X | X | X | Â | Â | Â | Â | X | Â | G | [15] |
SCNVSima | SE, PE | FQ | Java | X | X | X | X | X | X | Â | X | Â | G | [16] |
NEAT | SE, PE | FQ | Python | X | X | X | Â | Â | Â | X | X | Â | G, E | [17] |
IntSIM | SE, PE | FQ | C++, Perl, R | X | X | X | X | X | X | X | X | Â | G | [18] |
Pysim-sva | SE, PE | FQ | Python | X | X | X | X | X | X | X | X | Â | G | [19] |
InSilicoSeq | PE | FQ | Python | Â | Â | Â | Â | Â | Â | X | X | Â | G | [20] |
SimuSCoP | SE, PE | FQ | C++ | X | X | X | X | X | X | X | X | X | G, E | Â |