Fig. 1
From: SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN workflow. SHAMAN can start from raw reads or from processed data. In this last case, it needs at least three tables, the count matrix, the annotation table and the metadata which can either be provided into three different files or by using the BIOM format. The user can then select the variables of interest and add some batch effects. Then, contrast vectors can easily be defined and interactive visualizations are available