Fig. 5

Overview of TRIP tool’s pipeline: The two main functionalities (Clonotype and Highly Similar clonotype computation – represented with a blue) as well as the dependencies between the rest of the pipeline’s functions are illustrated above. Clonotype computation is the only step that is required for the pipeline to run, while every other procedure is optional. Green colored functions can be used for both T or B cells, while red colored function can be run only for B cells