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Table 2 Comparison of the results of the clonotype computation process using the Galaxy and the TRIP tools

From: TRIP - T cell receptor/immunoglobulin profiler

T3396 GALAXY T3396 TRIP
V-GENE AA JUNCTION Frequency % V-GENE AA JUNCTION Frequency %
TRBV4-1 CASSTTGTVDEKLFF 8.4826 TRBV4-1 CASSTTGTVDEKLFF 8.5093
TRBV12-3 CASSPNYSNQPQHF 3.5982 TRBV12-3 CASSPNYSNQPQHF 3.6485
TRBV5-4 CASSLGGTGELFF 2.4546 TRBV5-4 CASSLGGTGELFF 2.4594
TRBV20-1 CSARDGRDLEAQHF 1.9461 TRBV20-1 CSARDGRDLEAQHF 1.9503
TRBV19 CASSPRGFNTGELFF 1.3321 TRBV19 CASSPRGFNTGELFF 1.3341
TRBV4-1 CASSQRQGITGELFF 0.9452 TRBV4-1 CASSQRQGITGELFF 0.9471
TRBV11-1 CASSFWAGNTGELFF 0.7768 TRBV11-1 CASSFWAGNTGELFF 0.7780
TRBV27 CASSFTSAGELFF 0.7753 TRBV27 CASSFTSAGELFF 0.7737
TRBV29-1 CSVGGSGGTGYTF 0.6066 TRBV29-1 CSVGGSGGTGYTF 0.6064
TRBV27 CASRLGQAYGYTF 0.5531 TRBV27 CASRLGQAYGYTF 0.5483
Top10 cumumative frequency 21.4706    21.5567
T3397 GALAXY T3397 TRIP
V-GENE AA JUNCTION Frequency % V-GENE AA JUNCTION Frequency %
TRBV4-1 CASSTTGTVDEKLFF 14.8369 TRBV4-1 CASSTTGTVDEKLFF 14.8632
TRBV19 CASSPRGFNTGELFF 6.4774 TRBV19 CASSPRGFNTGELFF 6.4848
TRBV12-3 CASSPNYSNQPQHF 4.1264 TRBV12-3 CASSPNYSNQPQHF 4.1631
TRBV5-1 CASSPSKGQGGTGELFF 2.1106 TRBV5-1 CASSPSKGQGGTGELFF 2.1095
TRBV13 CASSSDDSPLHF 2.0741 TRBV13 CASSSDDSPLHF 2.0747
TRBV4-1 CASSQRQGITGELFF 2.0391 TRBV4-1 CASSQRQGITGELFF 2.0449
TRBV12-5 CASGDTGAGNTIYF 1.7406 TRBV12-5 CASGDTGAGNTIYF 1.7404
TRBV20-1 CSARDGRDLEAQHF 1.6190 TRBV20-1 CSARDGRDLEAQHF 1.6226
TRBV10-2 CASSLDGMNYGYTF 1.3040 TRBV10-2 CASSLDGMNYGYTF 1.3026
TRBV7-6 CASSPRQGRNEKLFF 1.0923 TRBV7-6 CASSPRQGRNEKLFF 1.0942
Top10 cumumative frequency 37.4204    37.5006
T3404 GALAXY T3404 TRIP
V-GENE AA JUNCTION Frequency % V-GENE AA JUNCTION Frequency %
TRBV28 CASSPPDTGELFF 23.0765 TRBV28 CASSPPDTGELFF 23.0543
TRBV7-2 CASRGGLYQPQHF 11.0932 TRBV7-2 CASRGGLYQPQHF 11.1012
TRBV29-1 CSVEDGQGPYSGNTIYF 2.1361 TRBV29-1 CSVEDGQGPYSGNTIYF 2.1345
TRBV18 CASSPTGGDSPLHF 0.9294 TRBV18 CASSPTGGDSPLHF 0.9273
TRBV15 CATSREGGEKLFF 0.7032 TRBV15 CATSREGGEKLFF 0.7040
TRBV5-1 CASSRSPLGTRDEQYF 0.6939 TRBV5-1 CASSRSPLGTRDEQYF 0.6935
TRBV15 CATSRDGQEYQPQHF 0.6661 TRBV15 CATSRDGQEYQPQHF 0.6641
TRBV29-1 CSVGGRLVGELFF 0.5738 TRBV29-1 CSVGGRLVGELFF 0.5746
TRBV15 CATSRDTLLAGEGGELFF 0.4378 TRBV15 CATSRDTLLAGEGGELFF 0.4372
TRBV29-1 CSVEYPGNGYTF 0.3101 TRBV29-1 CSVEYPGNGYTF 0.3099
Top10 cumumative frequency 40.6201    40.6008