Table 1 Computation time of each module in RiboMiner for different organisms
Modules | Yeast | Fly | Mouse | Human |
|---|---|---|---|---|
Data source | GSE89704 | GSE79626 | GSE32060 | GSE59821 |
Test samples | SRR5008135/ SRR5008137 | SRR3297802/ SRR3297804 | SRR649755/ SRR649757 | SRR2873530/ SRR2873532 |
Unique mapped reads | 16,318,577/ 18,441,750 | 7,627,569/ 12,099,927 | 16,457,639/ 7,282,998 | 11,557,500/ 12,896,290 |
QC | 32.2 min | 16.3 min | 35.1 min | 29.2 min |
MA | 24.6 min | 20.0 min | 14.2 min | 22.7 min |
FA | 21.6 min | 17.7 min | 14.6 min | 20.0 min |
EA | 2.4 min | 2.4 min | 2.4 min | 3.4 min |
Total | 80.8 min | 56.4 min | 66.3 min | 75.3 min |