Fig. 4

Explicit representation of protein activity states helped acquire a more accurate network with simulated datasets. a Recall relative to the ground-truth network. Error bars in this figure represent standard deviations from three simulation experiments. b Precision relative to the ground-truth network. c The comparison between the learned network by P_only experiment and the ground-truth network. d The comparison between the estimated network by I-P experiment and the ground-truth network. Dashed red arcs represent missed true arcs, solid red arcs show false arcs added, black edges with red arrowheads represent the misoriented edges, and black edges with black arrowheads show the true arcs discovered by the P_only or I-P group