Explicit representation of protein activity states significantly improves causal discovery of protein phosphorylation networks

Table 1 Different experiments for the real-world data analysis

Names	Input to FGES	A values	Input to InferA
P_only	P	N/A	N/A
A_as_P	P + A	Copied P values	N/A
K_Net	P + A	Inferred by InferA	K_Net + P/V
D_Net	P + A	Inferred by InferA	D_Net + P/V
rand_Net	P + A	Inferred by InferA	rand_Net + P/V
P-permuted	permuted P + A	Inferred by InferA	K_Net + permuted P/V

ISSN: 1471-2105