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Table 1 Runtimes and speedup for different scoring schemes on the IBM machine

From: GPU acceleration of Darwin read overlapper for de novo assembly of long DNA reads

 

(2,-1,-2,-2)

(1,-3,-1,-1)

(5,-4,-10,-1)

CPU

31m15

21m28s

31m27s

GPU-coalesced

76.0

59.3

78.0

speedup

24.7

21.7

24.2