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Table 3 Top ten significant deleted and amplified genes in tumor samples of 55 patients with LUAD. After gene enrichment analysis, the significantly amplified and deleted genes were listed with their aberration type, q value, genomic aberration region and gene region on specified chromosomes

From: Analysis of genomic and transcriptomic variations as prognostic signature for lung adenocarcinoma

Gene Symbol Aberration q-value Aberrant Region Gene Region
RN7SKP285 Del 0.00474651 1:103501576–107318961 1:103523562–10352879
RNPC3 Del 0.00474651 1:103501576–107318961 1:103525691–103555239
AMY2B Del 0.00474651 1:103501576–10318961 1:103553815–103579534
ACTG1P4 Del 0.00474651 1:103501576–10731961 1:103569553–103570674
AMY2A Del 0.00474651 1:103501576–107318961 1:103616811–103625780
AMY1A Del 0.00474651 1:103501576–107318961 1:103655290–103664554
AC105272.1 Del 0.00474651 1:103501576–107318961 1:103668071–10668268
AMY1B Del 0.00474651 1:103501576–107318961 1:103687415–103,696,680
AMYP1 Del 0.00474651 1:103501576–107318961 1:103713723–103719871
AMY1C Del 0.00474651 1:103501576–107318961 1:103750406–103758690
PLEKHO1 Amp 0.00474651 1:150131878–150768299 1:150149183–150164720
AC242988.2 Amp 0.00474651 1:150131878–150768299 1:150173049–150181429
RN7SL480P Amp 0.00474651 1:150131878–15768299 1:150211632–150211925
ANP32E Amp 0.00474651 1:150131878–150768299 1:150218417–150236156
RNU2-17P Amp 0.00474651 1:150131878–150768299 1:150236967–150237156
AC242988.1 Amp 0.00474651 1:150131878–150768299 1:150255095–150257286
CA14 Amp 0.00474651 1:150131878–15768299 1:150257251–150265078
APH1A Amp 0.00474651 1:150131878–150768299 1:150265399–150269580
C1orf54 Amp 0.00474651 1:150131878–150768299 1:150268200–150280916
CIART Amp 0.00474651 1:150131878–150768299 1:150282543–150287093
  1. Amp Amplification, Del Deletion
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