Table 3 Top ten significant deleted and amplified genes in tumor samples of 55 patients with LUAD. After gene enrichment analysis, the significantly amplified and deleted genes were listed with their aberration type, q value, genomic aberration region and gene region on specified chromosomes
From: Analysis of genomic and transcriptomic variations as prognostic signature for lung adenocarcinoma
Gene Symbol | Aberration | q-value | Aberrant Region | Gene Region |
|---|---|---|---|---|
RN7SKP285 | Del | 0.00474651 | 1:103501576–107318961 | 1:103523562–10352879 |
RNPC3 | Del | 0.00474651 | 1:103501576–107318961 | 1:103525691–103555239 |
AMY2B | Del | 0.00474651 | 1:103501576–10318961 | 1:103553815–103579534 |
ACTG1P4 | Del | 0.00474651 | 1:103501576–10731961 | 1:103569553–103570674 |
AMY2A | Del | 0.00474651 | 1:103501576–107318961 | 1:103616811–103625780 |
AMY1A | Del | 0.00474651 | 1:103501576–107318961 | 1:103655290–103664554 |
AC105272.1 | Del | 0.00474651 | 1:103501576–107318961 | 1:103668071–10668268 |
AMY1B | Del | 0.00474651 | 1:103501576–107318961 | 1:103687415–103,696,680 |
AMYP1 | Del | 0.00474651 | 1:103501576–107318961 | 1:103713723–103719871 |
AMY1C | Del | 0.00474651 | 1:103501576–107318961 | 1:103750406–103758690 |
PLEKHO1 | Amp | 0.00474651 | 1:150131878–150768299 | 1:150149183–150164720 |
AC242988.2 | Amp | 0.00474651 | 1:150131878–150768299 | 1:150173049–150181429 |
RN7SL480P | Amp | 0.00474651 | 1:150131878–15768299 | 1:150211632–150211925 |
ANP32E | Amp | 0.00474651 | 1:150131878–150768299 | 1:150218417–150236156 |
RNU2-17P | Amp | 0.00474651 | 1:150131878–150768299 | 1:150236967–150237156 |
AC242988.1 | Amp | 0.00474651 | 1:150131878–150768299 | 1:150255095–150257286 |
CA14 | Amp | 0.00474651 | 1:150131878–15768299 | 1:150257251–150265078 |
APH1A | Amp | 0.00474651 | 1:150131878–150768299 | 1:150265399–150269580 |
C1orf54 | Amp | 0.00474651 | 1:150131878–150768299 | 1:150268200–150280916 |
CIART | Amp | 0.00474651 | 1:150131878–150768299 | 1:150282543–150287093 |