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Table 4 Top ten significantly deleted and amplified genes in tumor samples of 510 patients with LUAD. After gene enrichment analysis, the significantly amplified and deleted genes were listed with their aberration type, q value, genomic aberration region and gene region on specified chromosomes

From: Analysis of genomic and transcriptomic variations as prognostic signature for lung adenocarcinoma

Gene Symbol Aberration q-value Aberrant Region Gene Region
AL359821.1 Del 0.0029609 1:71621685–71778398 1:71738173–71738354
GDI2P2 Del 0.0029609 1:71928758–119984738 1:72274552–72275159
AL513166.2 Del 0.0029609 1:71928758–119984738 1:72283170–72753772
RPL31P12 Del 0.0029609 1:71928758–119984738 1:72301472–72301829
AL583808.1 Del 0.0029609 1:71928758–119984738 1:72636547–72899240
RNU6-1246P Del 0.0029609 1:71928758–119984738 1:72717663–72717769
AL583808.2 Del 0.0029609 1:71928758–119984738 1:72765031–72791282
AL583808.3 Del 0.0029609 1:71928758–119984738 1:72793104–72854475
AL732618.1 Del 0.0029609 1:71928758–119984738 1:72979014–72979314
KRT8P21 Del 0.0029609 1:71928758–119984738 1:73104792–73106282
SF3B4 Amp 0.0029609 1:149907993–247650984 1:149923317–149927803
MTMR11 Amp 0.0029609 1:149907993–247650984 1:149928651–149936879
OTUD7B Amp 0.0029609 1:149907993–247650984 1:149937812–150010726
AC244033.2 Amp 0.0029609 1:149907993–247650984 1:150045660–150067701
AC244033.1 Amp 0.0029609 1:149907993–247650984 1:150053864–150055034
VPS45 Amp 0.0029609 1:149907993–247650984 1:150067279–150145329
PLEKHO1 Amp 0.0029609 1:149907993–247650984 1:150149183–150164720
AC242988.2 Amp 0.0029609 1:149907993–247650984 1:150173049–150181429
RN7SL480P Amp 0.0029609 1:149907993–247650984 1:150211632–150211925
ANP32E Amp 0.0029609 1:149907993–247650984 1:150218417–150236156
  1. Amp Amplification, Del Deletion
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