Table 1 Example of metadata reported for selected attributes in BioSample database. The attribute chosen for counting is shown in bold. The words entered by users are shown next to the number of times it was found in the subset of the samples examined
Package: | MIGS.ba.host-associated.5.0 | MIMARKS.specimen.host-associated.5.0 | Model.organism.animal.1.0 | |||
Total entries: | 2598 | 19,338 | 276,262 | |||
Attribute: | host tisssue sampled | host diet | developmental stage (required) | |||
Number of responses | 94 | 3616 | 179,373 | |||
Metadata provided | 27 | intestine | 358 | herbivore | 41,112 | adult |
16 | gill | 206 | CHO | 18,309 | missing | |
8 | Gill | 199 | therapeutic_hydrolyzed_protein_diet | 16,856 | not collected | |
6 | spleen | 191 | Chow | 16,416 | Adult | |
5 | nasopharynx | 144 | Artemia_salina | 16,209 | not applicable | |
5 | Mammary gland | 106 | KD | 5465 | Juvenile | |
4 | Sputum | 105 | regulat_diet | 4797 | juvenile | |
3 | bronchoalveolar lavage | 103 | Unmedicated_swine_feed | 2315 | NA | |
2 | Tissue | 91 | LFD | 2123 | Embryo | |
2 | pharynx | 90 | purified_rodent_diet_AIN-93 M | 2098 | mixed | |
2 | head kidney | 90 | 10%_sucrose_solution | 1511 | mixed stage | |
1 | Whole | 88 | HFD | 1401 | mature | |
1 | submandibular lymph node | 88 | finely_ground_Koi_food_(Foster_&_Smith,_Inc._Rhinelander,_WI) | 1160 | larva | |
1 | stomach | 84 | 10%_w/w_rice_bran_fermented_with_Bifidobacterium_longum_ATCC-55813 | 1077 | MISSING | |
1 | skin lesion | 79 | 10%_w/w_heat-stabilized_rice_bran | 1014 | tadpole | |
1 | Pleural fluid | 67 | Termitomyces | 988 | adult pig | |
1 | periodontal pocket | 64 | HC | 947 | months postnatal | |
1 | nasal cavity | 64 | dPD | 849 | embryo | |
1 | hepatopancreas | 62 | BASE | 682 | morula | |
1 | gut | 60 | omnivore | 679 | Not Collected | |
1 | gills | 56 | Fe_50ppm | 607 | unknown | |
1 | fecal droplets | 55 | Fe_500ppm | 563 | calf | |
1 | fat body tissues | 52 | dZD | 546 | not determined | |
1 | eye | 50 | dN | 534 | Not collected | |