smsMap: mapping single molecule sequencing reads by locating the alignment starting positions

BMC Bioinformatics

Table 2 FAR(%), FAB(%), and ACR(%) of seven methods on four real datasets

	Datasets	smsMap	lordFAST	BLASR	BWA-MEM	GraphMap^a	minimap2	NGLMR
FAR	E. coli	97.452	72.760	94.285	92.201	94.217	89.886	91.685
	A. thaliana	99.912	92.611	97.728	97.255	93.731	95.334	87.787
	C. elegans	99.018	94.630	98.430	98.333	96.975	97.540	95.011
	H. sapiens	99.182	90.280	97.921	96.651	–	94.762	90.722
FAB	E. coli	99.998	93.207	90.909	89.729	98.514	89.923	87.941
	A. thaliana	99.980	95.700	91.328	90.282	94.115	90.666	83.262
	C. elegans	99.623	93.564	93.602	91.688	97.783	93.206	88.904
	H. sapiens	99.956	93.923	91.588	90.321	–	92.349	85.219
ACR	E. coli	99.999	98.676	93.927	93.977	99.576	94.211	93.587
	A. thaliana	99.925	97.164	92.815	92.443	99.763	93.153	93.747
	C. elegans	99.994	94.841	95.342	93.925	99.779	95.168	93.665
	H. sapiens	99.999	96.381	92.393	92.896	–	94.143	91.738

^aGraphMap always appears core dumped information for H. sapiens dataset, it does not output the results

ISSN: 1471-2105