Skip to main content

Table 5 Running time (min) and memory usage (GB) of each mapping method on three datasets

From: smsMap: mapping single molecule sequencing reads by locating the alignment starting positions

   smsMap BWA-MEM BLASR lordFAST minimap2 GraphMap* NGMLR
E. coli Time 0.83 0.85 1.28 0.27 0.17 0.95 1.32
Memory 2.34 1.29 0.51 1.84 2.44 0.88 11.234
A. thaliana Time 3 32 24 3 2 6 12
Memory 2.56 1.25 3.58 2.03 4.94 3.19 11.45
C. elegans Time 10 87 61 10 2 24 25
Memory 2.52 2.11 3.58 2.04 8.53 3.18 11.60
H. sapiens Time 9 69 63 30 4 17
Memory 9.34 6.48 26.71 6.84 11.16 15.78
  1. *Due to that GraphMap always appears core dumped information for H. sapiens dataset, it does not output the results