Fig. 2

Benchmarking results for AdmixPipe. a The percent increase in runtime for AdmixPipe exhibits a nearly 1:1 ratio with respect to percent increase in the number of SNPs. Data are based upon pairwise comparisons (% increase) of runtime and input size for four datasets of varying size (61,910 SNPs, 25,851 SNPs, 19,140 SNPs, and 12,527 SNPs; R² = 0.975, degrees of freedom = 58). b shows benchmarking results for a range of K values (K = 1–8; 16 replicates at each K), while c) shows the equivalent results for K = 9–16 (16 replicates at each K). Time for b) and c) is presented in hours on the Y-axis. The number of processor cores (CPU = 1, 2, 4, 8, and 16) was varied across runs. Four data thinning intervals (1, 25, 50, and 100) produced variable numbers of SNPs (61,910, 25,851, 19,140, and 12,527 respectively)