Fig. 17From: ADEPT: a domain independent sequence alignment strategy for gpu architecturesMetaHipMer’s alignment phase using the CPU Smith-Waterman Kernel. Each rank gets a set of target sequences which are used to construct a global seed index stored in shared memory. Each process then performs a lookup in the distributed seed index and obtains a set of possible target candidates. A pair of target and read candidates are then passed to the SSW KernelBack to article page