Fig. 19From: ADEPT: a domain independent sequence alignment strategy for gpu architecturesThis figure shows the runtime breakdown of MetaHipMer pipeline with and without ADEPT-SW integration while processing the ArcticSynth dataset [42]. It can be observed that Smith Waterman (sw_kernel in legend) portion of pipeline speeds up by 2.9x giving alignment portion a speedup of 36%. Overall, MetaHipMer pipeline shows 10% performance improvement with ADEPT-SW integrationBack to article page