Table 1 This table shows features of three datasets that were generated using a UPC++ implementation of MetaHipMer assembler for evaluating performance for DNA based applications
From: ADEPT: a domain independent sequence alignment strategy for gpu architectures
Dataset | Query Set | Reference Set | Total Alignments | ||
|---|---|---|---|---|---|
| Â | Min. Size | Max. Size | Min. Size | Max. Size | Â |
DNA-1 | 150 | 200 | 99 | 779 | 31,071,476 |
DNA-2 | 201 | 250 | 99 | 979 | 8,892,748 |
DNA-3 | 251 | 300 | 99 | 1,131 | 16,308,186 |